{
  "_id": "6a16aedfacfb0bcc41d848d3",
  "Package": "bigSurvSGD",
  "Type": "Package",
  "Title": "Big Survival Analysis Using Stochastic Gradient Descent",
  "Version": "1.0.0",
  "Date": "2020-07-04",
  "Authors@R": "as.person(c(\n\"Aliasghar Tarkhan <atarkhan@uw.edu> [aut, cre]\",\n\"Noah Simon <nrsimon@uw.edu> [aut]\"\n))",
  "Description": "Fits Cox Model via stochastic gradient descent (SGD). This\nimplementation avoids computational instability of the standard\nCox Model when dealing large datasets. Furthermore, it scales\nup with large datasets that do not fit the memory. It also\nhandles large sparse datasets using Proximal stochastic\ngradient descent algorithm.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.0",
  "VignetteBuilder": "knitr",
  "Repository": "https://atarkhan.r-universe.dev",
  "Date/Publication": "2020-08-30 19:03:24 UTC",
  "RemoteUrl": "https://github.com/atarkhan/bigsurvsgd",
  "RemoteRef": "HEAD",
  "RemoteSha": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-27 08:37:29 UTC",
    "User": "root"
  },
  "Author": "Aliasghar Tarkhan [aut, cre],\nNoah Simon [aut]",
  "Maintainer": "Aliasghar Tarkhan <atarkhan@uw.edu>",
  "MD5sum": "bae2a3b547f1c62d182e035d3e124df2",
  "_user": "atarkhan",
  "_type": "src",
  "_file": "bigSurvSGD_1.0.0.tar.gz",
  "_fileid": "2450ab2ecd18279129e9ccf1b75c45caac3ddd670387fb2bd4b24f6914c0211b",
  "_filesize": 322052,
  "_sha256": "2450ab2ecd18279129e9ccf1b75c45caac3ddd670387fb2bd4b24f6914c0211b",
  "_created": "2026-05-27T08:37:29.000Z",
  "_published": "2026-05-27T08:44:15.860Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78039304401,
      "time": 154,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7235821340"
    },
    {
      "job": 78039304430,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7235817226"
    },
    {
      "job": 78039304424,
      "time": 135,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7235814657"
    },
    {
      "job": 78039304427,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7235815750"
    },
    {
      "job": 78039304436,
      "time": 224,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7235830747"
    },
    {
      "job": 78039304516,
      "time": 253,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7235849141"
    },
    {
      "job": 78039304433,
      "time": 218,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7235828185"
    },
    {
      "job": 78039304432,
      "time": 360,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7235883417"
    },
    {
      "job": 78038779257,
      "time": 193,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7235767854"
    },
    {
      "job": 78039304400,
      "time": 121,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7235810098"
    },
    {
      "job": 78039304387,
      "time": 111,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7235807081"
    },
    {
      "job": 78039304425,
      "time": 115,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7235808142"
    },
    {
      "job": 78039304582,
      "time": 148,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7235819323"
    }
  ],
  "_buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/atarkhan/bigsurvsgd",
  "_commit": {
    "id": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
    "author": "Arash Tarkhan <36647922+atarkhan@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Delete README.md",
    "time": 1598814204
  },
  "_maintainer": {
    "name": "Aliasghar Tarkhan",
    "email": "atarkhan@uw.edu",
    "login": "atarkhan",
    "description": "I have a PhD degree in Biostatistics from U of Washington. My research interests are high-dimensional data analysis, machine learning, and deep learning, and AI",
    "uuid": 36647922
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "foreach",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.4",
      "role": "Imports"
    },
    {
      "package": "bigmemory",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "atarkhan",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 9,
  "_contributors": [
    {
      "user": "atarkhan",
      "count": 20,
      "uuid": 36647922
    }
  ],
  "_userbio": {
    "uuid": 36647922,
    "type": "user",
    "name": "Arash Tarkhan",
    "description": "I have a PhD degree in Biostatistics from U of Washington. My research interests are high-dimensional data analysis, machine learning, and deep learning, and AI"
  },
  "_downloads": {
    "count": 207,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bigSurvSGD"
  },
  "_devurl": "https://github.com/atarkhan/bigsurvsgd",
  "_searchresults": 1,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/bigSurvSGD.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/atarkhan/bigsurvsgd",
  "_realowner": "atarkhan",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2020-10-01"
    }
  ],
  "_exports": [
    "bigSurvSGD",
    "lambdaMaxC",
    "oneChunkC",
    "oneObsPlugingC",
    "plot.bigSurvSGD",
    "print.bigSurvSGD"
  ],
  "_datasets": [
    {
      "name": "sparseSurvData",
      "title": "Simulated sparse survival dataset",
      "object": "sparseSurvData",
      "file": "sparseSurvData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "time",
        "status",
        "X1",
        "X2",
        "X3",
        "X4",
        "X5",
        "X6",
        "X7",
        "X8",
        "X9",
        "X10",
        "X11",
        "X12",
        "X13",
        "X14",
        "X15",
        "X16",
        "X17",
        "X18",
        "X19",
        "X20",
        "X21",
        "X22",
        "X23",
        "X24",
        "X25",
        "X26",
        "X27",
        "X28",
        "X29",
        "X30",
        "X31",
        "X32",
        "X33",
        "X34",
        "X35",
        "X36",
        "X37",
        "X38",
        "X39",
        "X40",
        "X41",
        "X42",
        "X43",
        "X44",
        "X45",
        "X46",
        "X47",
        "X48",
        "X49",
        "X50",
        "X51",
        "X52",
        "X53",
        "X54",
        "X55",
        "X56",
        "X57",
        "X58",
        "X59",
        "X60",
        "X61",
        "X62",
        "X63",
        "X64",
        "X65",
        "X66",
        "X67",
        "X68",
        "X69",
        "X70",
        "X71",
        "X72",
        "X73",
        "X74",
        "X75",
        "X76",
        "X77",
        "X78",
        "X79",
        "X80",
        "X81",
        "X82",
        "X83",
        "X84",
        "X85",
        "X86",
        "X87",
        "X88",
        "X89",
        "X90",
        "X91",
        "X92",
        "X93",
        "X94",
        "X95",
        "X96",
        "X97",
        "X98",
        "X99",
        "X100",
        "X101",
        "X102",
        "X103",
        "X104",
        "X105",
        "X106",
        "X107",
        "X108",
        "X109",
        "X110",
        "X111",
        "X112",
        "X113",
        "X114",
        "X115",
        "X116",
        "X117",
        "X118",
        "X119",
        "X120",
        "X121",
        "X122",
        "X123",
        "X124",
        "X125",
        "X126",
        "X127",
        "X128",
        "X129",
        "X130",
        "X131",
        "X132",
        "X133",
        "X134",
        "X135",
        "X136",
        "X137",
        "X138",
        "X139",
        "X140",
        "X141",
        "X142",
        "X143",
        "X144",
        "X145",
        "X146",
        "X147",
        "X148",
        "X149",
        "X150"
      ],
      "rows": 100,
      "table": true,
      "tojson": true
    },
    {
      "name": "survData",
      "title": "Simulated survival dataset",
      "object": "survData",
      "file": "survData.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "time",
        "status",
        "X1",
        "X2",
        "X3",
        "X4",
        "X5",
        "X6",
        "X7",
        "X8",
        "X9",
        "X10"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bigSurvSGD",
      "title": "Big survival data analysis using stochastic gradient descent",
      "topics": [
        "bigSurvSGD",
        "plot.bigSurvSGD",
        "print.bigSurvSGD"
      ]
    },
    {
      "page": "lambdaMaxC",
      "title": "Calculates the maximum penalty coefficient lambda for which all coefficients become zero",
      "topics": [
        "lambdaMaxC"
      ]
    },
    {
      "page": "oneChunkC",
      "title": "Updates the coefficients based on one pass of data",
      "topics": [
        "oneChunkC"
      ]
    },
    {
      "page": "oneObsPlugingC",
      "title": "Calculates the gradient and Hessian corresponding to one individual",
      "topics": [
        "oneObsPlugingC"
      ]
    },
    {
      "page": "sparseSurvData",
      "title": "Simulated sparse survival dataset",
      "topics": [
        "sparseSurvData"
      ]
    },
    {
      "page": "survData",
      "title": "Simulated survival dataset",
      "topics": [
        "survData"
      ]
    }
  ],
  "_rundeps": [
    "BH",
    "bigmemory",
    "bigmemory.sri",
    "codetools",
    "doParallel",
    "foreach",
    "iterators",
    "lattice",
    "Matrix",
    "Rcpp",
    "survival",
    "uuid"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.4313637641589874,
  "_indexed": true,
  "_nocasepkg": "bigsurvsgd",
  "_universes": [
    "atarkhan"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-27T08:40:08.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "f92f3d2e71bb2a9317d200e4dc73b6b7df89a96ab352be55175df98ed27e5ae6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:53.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "a831e506781488869ee55a1409b4b18c08c96f727385d173d4da3551fca29c62",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:49.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "5ee964a6d6c15f24c19dec7c62161d6fcb900f7125da8490a3d1a726b801f97b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:49.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "43517b39c510a6ee81638044c0036fa489d4d674a1a2c32d5e37a5df36dcad11",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-27T08:40:31.000Z",
      "arch": "aarch64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "928de7e46e38aa9b8171a62270fa457f8b9162bf3d5f4cfb8fb8d0efdb5faf57",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-27T08:41:18.000Z",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "c2e9ac8eacb6069566b7c14fcf88cf0be79c1cb6ba626c6c73a8f126da08bf3c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-27T08:40:14.000Z",
      "arch": "aarch64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "4ea5bccdf8e288265fb8ed44d9b20d2b7bd9bb54b9bfe9ac7e0c30b2eee8e9a8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-27T08:42:38.000Z",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "500871dc7efda4210d0f0fc3495b10a730d2536355cb80ff6a10b3eff31ede5e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:48.000Z",
      "arch": "emscripten",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "4a0124c787bbf68c85fba79a81c401f64c93ea0616dfbb16336eca971b6b4648",
      "status": "success",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:03.000Z",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "9bc74ac2a2e04fee0df1a7b09f1c43400593c2a1e8055404c693430f5ded6aaa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:09.000Z",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "6b6286c41d2806ee664f8946b2c9a387900bef8d55c3e59698881ad34c855637",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-27T08:39:15.000Z",
      "arch": "x86_64",
      "commit": "8dc4e4aa4bbdccf4819273a1e481254dc3323c17",
      "fileid": "a97deb2912c980c41006d5514c5c896eb3e52191053a431953e6267c53405b3e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/atarkhan/actions/runs/26500304032"
    }
  ]
}